20th February 2013
| Northern Section Final 2nd Leg | 0-2 | Coventry City |
| Southern Section Final 2nd Leg | Southend United | 2-2 | Leyton Orient |
5th February 2013
| Southern Section Final 1st Leg | Leyton Orient | 0-1 | Southend United |
| Northern Section Final 1st Leg | Coventry City | 0-3 |
15th January 2013
| Northern Section Semi-Final | 4-1 | Bradford City |
10th January 2013
| Northern Section Semi-Final | Coventry City | 3-2 | Preston North End |
8th January 2013
| Southern Section Semi-Final | Leyton Orient | 1-0 |
| Southern Section Semi-Final | Oxford United | 3-3 | Southend United |
18th December 2012
| Northern Section Quarter-Final | 3-3 | Preston North End |
5th December 2012
| Southern Section Quarter-Final | Northampton Town | 0-3 | Leyton Orient |
4th December 2012
| Southern Section Quarter-Final | Plymouth Argyle | 1-1 | Oxford United |
| Southern Section Quarter-Final | 2-0 | Wycombe Wanderers |
| Southern Section Quarter-Final | Southend United | 2-1 | Brentford |
| Northern Section Quarter-Final | Port Vale | 0-2 | Bradford City |
| Northern Section Quarter-Final | 1-1 |
| Northern Section Quarter-Final | Coventry City | 1-1 | Sheffield United |
17th October 2012
| Northern Section 2nd Round | Notts. County | 1-4 | Sheffield United |
16th October 2012
| Southern Section 2nd Round | 2-2 |
9th October 2012
| Northern Section 2nd Round | Shrewsbury Town | 1-2 |
| Northern Section 2nd Round | 1-1 |
| Northern Section 2nd Round | Morecambe | 2-4 | Preston North End |
| Northern Section 2nd Round | Walsall | 2-2 | Port Vale |
| Northern Section 2nd Round | 0-4 | Coventry City |
| Southern Section 2nd Round | Leyton Orient | 1-0 |
| Northern Section 2nd Round | 0-0 | Bradford City |
| Southern Section 2nd Round | Brentford | 1-0 | Crawley Town |
| Southern Section 2nd Round | Cheltenham Town | 2-4 | Oxford United |
| Southern Section 2nd Round | Northampton Town | 2-1 | Colchester United |
| Southern Section 2nd Round | Portsmouth | 1-3 | Wycombe Wanderers |
| Southern Section 2nd Round | Southend United | 2-0 |
| Southern Section 2nd Round | Plymouth Argyle | 2-1 |
| Northern Section 2nd Round | 1-0 |
5th September 2012
| Southern Section 1st Round | Oxford United | 1-0 |
4th September 2012
| Southern Section 1st Round | Northampton Town | 1-0 |
| Southern Section 1st Round | 3-2 | Stevenage |
| Southern Section 1st Round | Southend United | 2-1 |
| Southern Section 1st Round | Exeter City | 0-0 |
| Southern Section 1st Round | Portsmouth | 2-2 | AFC Bournemouth |
| Southern Section 1st Round | Bristol Rovers | 0-3 |
| Northern Section 1st Round | Scunthorpe United | 1-2 | Notts. County |
| Northern Section 1st Round | 2-1 | Oldham Athletic |
| Northern Section 1st Round | Coventry City | 0-0 | Burton Albion |
| Northern Section 1st Round | Rotherham United | 0-1 |
| Northern Section 1st Round | Port Vale | 2-0 | Tranmere Rovers |
| Northern Section 1st Round | 0-2 | Morecambe |
| Northern Section 1st Round | Carlisle United | 1-1 | Preston North End |
| Northern Section 1st Round | 2-2 | Fleetwood Town |
| Southern Section 1st Round | Crawley Town | 3-2 |