2nd April 2006
| Final | Carlisle United | 1-2 | Swansea City |
14th March 2006
| Southern Section Final 2nd Leg | Colchester United | 1-2 | Swansea City |
7th March 2006
| Southern Section Final 1st Leg | Swansea City | 1-0 | Colchester United |
| Northern Section Final 2nd Leg | Macclesfield Town | 3-2 | Carlisle United |
21st February 2006
| Northern Section Final 1st Leg | Carlisle United | 2-1 | Macclesfield Town |
24th January 2006
| Southern Section Semi-Final | Swansea City | 2-2 | Walsall |
| Northern Section Semi-Final | Carlisle United | 1-0 |
| Northern Section Semi-Final | Macclesfield Town | 2-0 |
| Southern Section Semi-Final | Cheltenham Town | 0-1 | Colchester United |
20th December 2005
| Northern Section Quarter-Final | 2-0 | Scunthorpe United |
| Northern Section Quarter-Final | 2-1 | Bradford City |
| Northern Section Quarter-Final | 0-0 | Carlisle United |
| Southern Section Quarter-Final | Cheltenham Town | 2-1 | Oxford United |
| Southern Section Quarter-Final | Walsall | 3-2 | Wycombe Wanderers |
| Southern Section Quarter-Final | 1-2 | Colchester United |
13th December 2005
| Northern Section 2nd Round | FC Halifax Town | 1-3 | Scunthorpe United |
| Northern Section Quarter-Final | Macclesfield Town | 4-2 | Cambridge United |
| Southern Section Quarter-Final | Swansea City | 3-1 | Peterborough United |
28th November 2005
| Southern Section 2nd Round | 1-5 | Cheltenham Town |
23rd November 2005
| Southern Section 2nd Round | Oxford United | 1-0 | Leyton Orient |
| Northern Section 2nd Round | 0-3 |
| Southern Section 2nd Round | Colchester United | 3-2 | Northampton Town |
22nd November 2005
| Northern Section 2nd Round | Rotherham United | 1-2 | Macclesfield Town |
| Northern Section 2nd Round | Carlisle United | 2-1 | Blackpool |
| Southern Section 2nd Round | Walsall | 1-0 | AFC Bournemouth |
| Northern Section 2nd Round | Morecambe | 0-1 | Bradford City |
| Northern Section 2nd Round | 2-1 | Port Vale |
| Northern Section 2nd Round | 3-2 |
| Southern Section 2nd Round | Swansea City | 4-0 |
| Northern Section 2nd Round | Cambridge United | 3-2 |
| Southern Section 2nd Round | Peterborough United | 2-1 | Swindon Town |
| Southern Section 2nd Round | Barnet | 0-3 |
| Southern Section 2nd Round | 2-2 | Wycombe Wanderers |
19th October 2005
| Northern Section 1st Round | 2-1 | Huddersfield Town |
18th October 2005
| Northern Section 1st Round | 2-1 | Lincoln City |
| Northern Section 1st Round | Mansfield Town | 0-1 |
| Northern Section 1st Round | Grimsby Town | 1-1 | Morecambe |
| Northern Section 1st Round | Barnsley | 2-5 |
| Southern Section 1st Round | 3-2 | Nottingham Forest |
| Southern Section 1st Round | Northampton Town | 5-2 | Notts. County |
| Southern Section 1st Round | Brentford | 1-1 | Oxford United |
| Northern Section 1st Round | Scunthorpe United | 1-0 | Hartlepool United |
| Southern Section 1st Round | 3-2 | Exeter City |
| Southern Section 1st Round | AFC Bournemouth | 4-1 | Aldershot Town |
| Southern Section 1st Round | Barnet | 3-2 | Bristol City |
| Northern Section 1st Round | FC Halifax Town | 6-1 |
| Northern Section 1st Round | Oldham Athletic | 1-1 | Carlisle United |
| Northern Section 1st Round | 2-1 |
| Southern Section 1st Round | 1-0 |
| Southern Section 1st Round | Swindon Town | 2-0 | Stevenage |
| Northern Section 1st Round | 3-1 |
| Southern Section 1st Round | 1-3 | Swansea City |
| Southern Section 1st Round | Wycombe Wanderers | 2-1 | Dagenham & Redbridge |
| Northern Section 1st Round | Rotherham United | 3-3 |
| Southern Section 1st Round | Shrewsbury Town | 0-2 | Cheltenham Town |
| Southern Section 1st Round | 2-0 | Crawley Town |
| Southern Section 1st Round | Peterborough United | 2-1 | Bristol Rovers |
| Northern Section 1st Round | Blackpool | 4-3 | Wrexham |
| Northern Section 1st Round | Cambridge United | 3-0 |
| Northern Section 1st Round | Macclesfield Town | 2-0 | Chesterfield |
| Southern Section 1st Round | Leyton Orient | 2-0 |