1st April 2007
| Final | Bristol Rovers | 2-3 |
27th February 2007
| Southern Section Final 2nd Leg | Bristol Rovers | 1-0 | Bristol City |
21st February 2007
| Southern Section Final 1st Leg | Bristol City | 0-0 | Bristol Rovers |
12th February 2007
| Northern Section Final 2nd Leg | 3-2 | Crewe Alexandra |
30th January 2007
| Northern Section Final 1st Leg | Crewe Alexandra | 3-3 |
| Southern Section Semi-Final | Shrewsbury Town | 0-1 | Bristol Rovers |
23rd January 2007
| Southern Section Semi-Final | Bristol City | 2-0 | Brighton & Hove Albion |
10th January 2007
| Northern Section Semi-Final | Chesterfield | 2-4 | Crewe Alexandra |
9th January 2007
| Northern Section Semi-Final | 2-0 |
29th November 2006
| Southern Section Quarter-Final | Nottingham Forest | 2-2 | Bristol City |
| Northern Section Quarter-Final | Port Vale | 2-3 | Crewe Alexandra |
| Northern Section Quarter-Final | Chesterfield | 4-4 |
| Southern Section Quarter-Final | Bristol Rovers | 1-0 | Peterborough United |
28th November 2006
| Southern Section Quarter-Final | Millwall | 1-1 | Brighton & Hove Albion |
| Southern Section Quarter-Final | Cheltenham Town | 2-3 | Shrewsbury Town |
| Northern Section Quarter-Final | 1-0 | Mansfield Town |
| Northern Section Quarter-Final | 2-0 |
1st November 2006
| Southern Section 2nd Round | Leyton Orient | 1-3 | Bristol City |
| Northern Section 2nd Round | Oldham Athletic | 0-1 | Chesterfield |
| Southern Section 2nd Round | Brighton & Hove Albion | 4-1 |
31st October 2006
| Northern Section 2nd Round | Hartlepool United | 1-3 |
| Northern Section 2nd Round | Mansfield Town | 3-0 | Grimsby Town |
| Northern Section 2nd Round | 1-1 | Crewe Alexandra |
| Northern Section 2nd Round | 0-1 |
| Northern Section 2nd Round | 3-0 |
| Southern Section 2nd Round | Millwall | 2-0 | AFC Bournemouth |
| Southern Section 2nd Round | Nottingham Forest | 2-1 | Brentford |
| Southern Section 2nd Round | Peterborough United | 1-0 | Swansea City |
| Southern Section 2nd Round | Shrewsbury Town | 2-1 |
| Southern Section 2nd Round | Wycombe Wanderers | 0-2 | Bristol Rovers |
| Southern Section 2nd Round | Cheltenham Town | 3-2 | Barnet |
| Northern Section 2nd Round | 4-4 | Blackpool |
30th October 2006
| Northern Section 2nd Round | Scunthorpe United | 0-0 | Port Vale |
17th October 2006
| Southern Section 1st Round | Bristol Rovers | 1-0 |
| Southern Section 1st Round | 1-2 | Shrewsbury Town |
| Southern Section 1st Round | Walsall | 1-1 | Swansea City |
| Southern Section 1st Round | Wycombe Wanderers | 1-0 | Swindon Town |
| Southern Section 1st Round | 1-2 | Nottingham Forest |
| Southern Section 1st Round | Notts. County | 0-1 | Barnet |
| Southern Section 1st Round | Northampton Town | 0-0 | Brentford |
| Southern Section 1st Round | Brighton & Hove Albion | 2-0 |
| Northern Section 1st Round | Lincoln City | 0-0 | Grimsby Town |
| Northern Section 1st Round | Huddersfield Town | 1-2 |
| Northern Section 1st Round | Bradford City | 1-2 | Scunthorpe United |
| Northern Section 1st Round | Hartlepool United | 3-1 | Rotherham United |
| Northern Section 1st Round | 0-2 |
| Northern Section 1st Round | Macclesfield Town | 0-1 |
| Northern Section 1st Round | Wrexham | 1-1 |
| Northern Section 1st Round | 1-1 | Carlisle United |