9th May 2009
| Final | Stevenage | 2-0 |
21st March 2009
| Semi Final 2nd Leg | 2-1 |
| Semi Final 2nd Leg | 0-1 | Stevenage |
14th March 2009
| Semi Final 1st Leg | 0-2 |
| Semi Final 1st Leg | Stevenage | 3-2 |
24th February 2009
| 4th Round Replay | 3-1 | Wrexham |
| 4th Round Replay | 0-1 |
21st February 2009
| 4th Round | 2-2 |
| 4th Round | Stevenage | 4-0 |
| 4th Round | Wrexham | 0-0 |
| 4th Round | 2-0 |
16th February 2009
| 3rd Round | 2-0 | Crawley Town |
11th February 2009
| 3rd Round Replay | 1-1 |
31st January 2009
| 3rd Round | 1-1 |
| 3rd Round | Stevenage | 4-0 | Burton Albion |
| 3rd Round | 1-3 | Wrexham |
| 3rd Round | 3-0 |
| 3rd Round | 0-1 |
| 3rd Round | 1-0 |
| 3rd Round | 2-0 |
19th January 2009
| 2nd Round Replay | 4-3 |
14th January 2009
| 2nd Round | Cambridge United | 0-5 | Crawley Town |
| 2nd Round Replay | 1-1 |
13th January 2009
| 2nd Round | 1-6 |
| 2nd Round | 4-0 |
| 2nd Round | 3-5 |
| 2nd Round | 2-1 |
| 2nd Round | 0-2 | Stevenage |
| 2nd Round | 4-3 |
| 2nd Round | 3-3 |
| 2nd Round Replay | 3-1 |
| 2nd Round | Barrow | 0-3 |
| 2nd Round | 1-2 | Wrexham |
| 2nd Round | Oxford United | 1-2 |
11th January 2009
| 2nd Round | 5-0 |
| 2nd Round | 1-1 |
10th January 2009
| 2nd Round | 1-0 |
| 2nd Round | Burton Albion | 3-0 |
| 2nd Round | 1-1 |
23rd December 2008
| 1st Round Replay | 2-2 | Burton Albion |
| 1st Round Replay | 2-1 |
17th December 2008
| 1st Round | 1-0 |
16th December 2008
| 1st Round Replay | 1-1 | Newport County |
| 1st Round | 3-1 |
| 1st Round | 3-2 |
| 1st Round | 0-1 |
| 1st Round | 2-4 | Crawley Town |
| 1st Round | Burton Albion | 1-1 |
| 1st Round | 0-2 |
| 1st Round | 2-0 |
| 1st Round | 2-2 |
| 1st Round | 1-6 |
| 1st Round | 1-2 |
| 1st Round | 3-2 |
| 1st Round | 3-2 |
| 1st Round | 2-0 |
| 1st Round | 3-1 |
| 1st Round | 0-2 |
15th December 2008
| 1st Round | 3-1 |
13th December 2008
| 1st Round | Barrow | 2-1 |
| 1st Round | 1-4 |
| 1st Round | Wrexham | 2-1 | Mansfield Town |
| 1st Round | 1-2 |
| 1st Round | 2-0 |
| 1st Round | 2-3 | Cambridge United |
| 1st Round | 4-3 |
| 1st Round | 2-0 | Harrogate Town |
| 1st Round | 1-4 |
| 1st Round | 1-2 |
| 1st Round | 2-1 | AFC Wimbledon |
| 1st Round | 0-2 | Oxford United |
| 1st Round | Newport County | 1-1 |
| 1st Round | 5-1 |
| 1st Round | Stevenage | 4-1 |